Publications

Methods for studying microbial acid stress responses: from molecules to populations
Journal / Periodical: FEMS Microbiology Reviews
Authors: Atasoy, M.; Bartkova, S.; Çetecioğlu-Gürol, Z.; Mira, N.; O'Byrne, C.; Pérez-Rodríguez, F.; Possas, A.; Scheler, O.; Sedláková-Kaduková, J.; Sinčák, M.; Steiger, M.; Ziv, C.; Lund, P. A.
Year: 2024
High-throughput bacterial aggregation analysis in droplets
Authors: Saar-Abroi, Merili; Lindpere, Karoliine; Olman, Triini; Sulp, Fenella Lucia; Kiir, Katri; Sanka, Immanuel; Bartkova, Simona; Scheler, Ott
Year: 2024
Overcoming donor variability and risks associated with fecal microbiota transplants through bacteriophage-mediated treatments
Journal / Periodical: Microbiome
Authors: Rasmussen, Torben Sølbeck; Mao, Xiaotian; Forster, Sarah; Larsen, Sabina Birgitte; Von Münchow, Alexandra; Tranæs, Kaare Dyekær; Brunse, Anders; Larsen, Frej; Mejia, Josue Leonardo Castro; Adamberg, Signe; Hansen, Axel Kornerup; Adamberg, Kaarel; Hansen, Camilla Hartmann Friis; Nielsen, Dennis Sandris
Year: 2024
Metaproteomics reveals parallel utilization of colonic mucin glycans and dietary fibers by the human gut microbiota
Journal / Periodical: iScience
Authors: Raba, Grete; Luis, Ana S; Schneider, Hannah; Morell, Indrek; Jin, Chunsheng; Adamberg, Signe; Hansson, Gunnar C; Adamberg, Kaarel; Arike, Liisa
Year: 2024
Transfer of modified gut viromes improves symptoms associated with metabolic syndrome in obese male mice
Journal / Periodical: Nature Communications
Authors: Mao, Xiaotian; Larsen, Sabina Birgitte; Zachariassen, Line Sidsel Fisker; Brunse, Anders; Adamberg, Signe; Mejia, Josue Leonardo Castro; Larsen, Frej; Adamberg, Kaarel; Nielsen, Dennis Sandris; Hansen, Axel Kornerup; Hansen, Camilla Hartmann Friis; Rasmussen, Torben Sølbeck
Year: 2024
Prevotella enterotype associates with diets supporting acidic faecal pH and production of propionic acid by microbiota
Journal / Periodical: Heliyon
Authors: Adamberg, Signe; Adamberg, Kaarel
Year: 2024
Reproducible chemostat cultures to minimize eukaryotic viruses from fecal transplant material
Journal / Periodical: iScience
Authors: Adamberg, Signe; Rasmussen, Torben, Sølbeck; Larsen Sabina Brigitte; Mao, Xiaotian; Nielsen, Dennis, Sandris; Adamberg, Kaarel
Year: 2024
α-Lipoic acid: a potential regulator of copper metabolism in Alzheimer’s disease
Journal / Periodical: Frontiers in Molecular Biosciences
Authors: Kirss, Sigrid; Reinapu, Anette; Kabin, Ekaterina; Smirnova, Julia; Tõugu, Vello; Palumaa, Peep
Year: 2024
A negatively charged cluster in the disordered acidic domain of GPIHBP1 provides selectivity in the interaction with lipoprotein lipase.
Journal / Periodical: Scientific Reports
Authors: Risti, Robert; Reimund, Mart; Seeba, Natjan-Naatan; Lõokene, Aivar
Year: 2024
Embedded blur-free single-image acquisition pipeline for droplet microfluidic imaging flow cytometry (IFC)
Journal / Periodical: IEEE Access
Authors: Afrin, Fariha; Pärnamets, Kaiser; Le Moullec, Yannick; Udal, Andres; Koel, Ants; Pardy, Tamas; Rang, Toomas
Year: 2024
Co-Design of a Wireless Networked Control System for Reliability and Resource-Efficiency
Journal / Periodical: Proceedings of the 19th Baltic Electronics Conference (BEC2024)
Authors: Ashraf, Kanwal; Le Moullec, Yannick; Pardy, Tamas; Rang, Toomas
Year: 2024
Preparation and characterization of lignin-derived carbon aerogels
Journal / Periodical: Frontiers in Chemistry
Authors: Jõul, Piia; Järvik, Oliver; Lees, Heidi; Kallavus, Urve; Koel, Mihkel; Lukk, Tiit
Year: 2024
Plantago major and Plantago lanceolata Exhibit Antioxidant and Borrelia burgdorferi Inhibiting Activities
Journal / Periodical: International Journal of Molecular Sciences
Authors: Laanet, Pille-Riin; Bragina, Olga; Jõul, Piia; Vaher, Merike
Year: 2024
Protocol for the preparation of primary amine-containing catalysts on the resin
Journal / Periodical: STAR Protocols
Authors: Murre, Aleksandra; Erkman, Kristin; Kanger, Tõnis
Year: 2024